PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039094.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 334aa    MW: 36149.1 Da    PI: 9.6021
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039094.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.92.4e-3351106357
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                   v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHR ++
  Pbr039094.1  51 VVAYKECLKNHAASLGGHALDGCGEFMPSPSSNpADPTSLKCAACGCHRNFHRLDQ 106
                  689******************************9*******************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.3E-2852104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2254103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.03254105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-3054104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-26194263IPR009057Homeodomain-like
SuperFamilySSF466892.96E-16197264IPR009057Homeodomain-like
TIGRFAMsTIGR015657.0E-26203259IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNFTTVTATI QTPDTDTEPP SPSDPKSNFF SSRSLSFTNG AFQPQSTPTM VVAYKECLKN  60
HAASLGGHAL DGCGEFMPSP SSNPADPTSL KCAACGCHRN FHRLDQYRPK SNVIRNPHRL  120
LPAPKPAHYN HSSSPSPSSS PNPTLSPQSP PPVSHLPPSY FASPPQMLLA LSSGFSGPSD  180
EHHHQHQLNP TAVKKTEKYP GEKKRSRTRF SQEQKEKMSS FAEKVGWRLQ KSEERLVEDF  240
CSEVGIGRGV FKVWMHNNKH GRRRLERSGG GNGSIGGGGN MNKNVSEING DGERLGFDSM  300
NAHIAGYNVN ANPLNEGSRA SFHLSNNGSS SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-192042601874ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360340.10.0PREDICTED: zinc-finger homeodomain protein 8
SwissprotQ9SEZ15e-65ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLM5XJ801e-136M5XJ80_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.18e-60zinc finger homeodomain 1